PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034960.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 260aa    MW: 28870 Da    PI: 9.1654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034960.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-1371117354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+h+e+ErrRR+riNs +++Lr l+P        K++Ka+ L +++e +k+L
  EcC034960.10  71 RNHSEAERRRRERINSHLATLRGLVPGE-----DKMDKATLLAHVIEEVKEL 117
                   58*************************7.....7*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.37768117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1071117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1371122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1372120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-1174123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.49E-6156228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MALYSNYCDG LHGSDPHQMF DPLLRANGSA PAMDTPQSLV LDGEKSELVI KAPNRAAKKN  60
VPEEKALAAL RNHSEAERRR RERINSHLAT LRGLVPGEDK MDKATLLAHV IEEVKELKKT  120
ALEASKGLLV PLDADEVKVE PLDDATGNGT FSFKASICCQ YRPELLSDLR QAINALHLKI  180
VKAEISTLES RLRNEFIFLS GKEQFSYNWS LQRQLLASSI RQALCSVLAK TSISSEYSPR  240
TTLPSKRRRV SFLNSSSPSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681ERRRRE
2245249KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052204.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A059CCE90.0A0A059CCE9_EUCGR; Uncharacterized protein
STRINGVIT_14s0068g01580.t016e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-36bHLH family protein